Paper at ICTCS’20

Our paper  “Shape-Preserving Pattern Matching, Simone Faro, Domenico Cantone, M. Oguzhan Kulekci” appeared in the 21st Italian Conference on Theoretical Computer Science.

Paper at Algorithms Journal

Our paper “A Survey on Shortest Unique Substring Queries, Paniz Abedin, M. Oğuzhan Külekci, Sharma V. Thankachan” has appeared in the MDPI-Algorithm journal.

Paper at PSC'20 – 24th Prague Stringology Conference

Our joint study with my students Yasin Öztürk, Elif Altunok, and Can Altıniğne  “Enumerative Data Compression with Non-Uniquely Decodable Codes” has been presented at the 24th Prague Stringology Conference. The proceedings of the conference can be reached via this link.  

Webinar on "Algoritma Mühendisliği" (Algorithm Engineering)

I have delivered a webinar with the title “Algoritma Mühendisliği – Kuramsal Hesaplamadan Yazılım Mühendisliğine Seyahat” (Algorithm Engineering – A journey from theory of computation to software engineering) in the  PITSTOP talk series organized jointly by İTÜNOVA and TOSB. Thanks for the opportunity to speak on that. You can watch the webinar from the youtube link Slides … Read more

Paper at CPM’20

Our  paper “FM-index reveals the reverse suffix array, A. Ganguly, D. Gibney, S. Hooshmand, M.O. Kulekci, S.V. Thankachan” has been accepted to CPM’2020 – 31th Annual Symposium on Combinatorial Pattern Matching. This work has been partially supported by the research fund of Istanbul Technical University under project number MGA-2019-42224.   

Paper at "Nature Methods" Journal

“Sketching algorithms for genomic data analysis and querying in a secure enclave”,  C. Kockan, Kaiyuan Zhu, Natnatee Dokmai, Nikolai Karpov, M. Oguzhan Kulekci, David P. Woodruff,S. Cenk Sahinalp have appeared in the March issue of Nature Methods (volume 17, pages 295–301).

Intramural Research Funding

My proposal (Ters Metin İndeksinin Düz Metin İndeksi Kullanılarak Oluşturulması ve Uygulamaları )received the intramural support from Istanbul Technical University and granted with the project number BAP-MGA-2019-42224 with a budget of approximately 50K TL starting at 15 October 2019 and ending date is 15 August 2020.   Proje Özeti: Bir metnin üzerinde hızlı arama gerçekleştirebilmek için, … Read more